.. _PhysiCell_java_CancerBiorobots_Visualizer_java:

Visualizer.java
===============

.. role:: raw-html(raw)
   :format: html

.. raw:: html

   <style>
   pre {
      white-space: pre-wrap !important;       /* Сохраняет пробелы, но разрешает перенос */
      word-wrap: break-word !important;       /* Переносит длинные слова */
      overflow-wrap: break-word !important;   /* Альтернатива для совместимости */
      hyphens: auto !important;               /* Перенос с тире */
   }
   </style>

.. code-block:: console

    import java.awt.Color;

    import ru.biosoft.physicell.core.Cell;
    import ru.biosoft.physicell.core.CellDefinition;
    import ru.biosoft.physicell.core.Model;
    import ru.biosoft.physicell.core.SignalBehavior;
    import ru.biosoft.physicell.ui.AgentColorer;

    public class Visualizer extends AgentColorer
    {
        private SignalBehavior signals;

        public Visualizer(Model model)
        {
        signals = model.getSignals(); 
        }

        @Override
        public Color findBorderColor(Cell cell)
        {
            return Color.black;
        }

        @Override
        public Color[] findColors(Cell cell)
        {
            double damage = signals.getSingleSignal( cell, "damage" );
            double maxDamage = 1.0 * signals.getSingleSignal( cell, "custom:damage_rate" )
                    / ( 1e-16 + signals.getSingleSignal( cell, "custom:repair_rate" ) );

            CellDefinition pCD_cargo = cell.getModel().getCellDefinition( "cargo cell" );
            CellDefinition pCD_worker = cell.getModel().getCellDefinition( "worker cell" );

            if( cell.type == pCD_cargo.type )
                return new Color[] {Color.blue, Color.blue};

            if( cell.type == pCD_worker.type )
                return new Color[] {Color.red, Color.red};

            Color[] output = new Color[] {Color.black, Color.black, Color.black, Color.black};

            if( signals.getSingleSignal( cell, "apoptotic" ) > 0.5 ) // Apoptotic - cyan
            {
                output[0] = Color.cyan;
                output[2] = Color.cyan.darker();
                return output;
            }

            if( signals.getSingleSignal( cell, "necrotic" ) > 0.5 )
            {
                output[0] = new Color( 250, 138, 38 );
                output[2] = new Color( 139, 69, 19 );
                return output;
            }
            // live tumor -- shade by level of damage  if live: color by damage 
            if( signals.getSingleSignal( cell, "dead" ) < 0.5 )
            {
                int damageInt = (int)Math.round( damage * 255.0 / maxDamage );
                Color c = new Color( damageInt, 255 - damageInt, damageInt );
                Color c2 = new Color( damageInt / 4, ( 255 - damageInt ) / 4, damageInt / 4 );
                return new Color[] {c, c, c2, c2};
            }
            return output;
        }
    }