BioUML platform
===============
.. image:: images/biouml.png

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   BioUML is an integrated platform for systems biology
   |br| and collaborative analysis of biomedical data

.. toctree::
   :maxdepth: 2
   :caption: Начало работы в BioUML

   intro.rst
   user_interface.rst

.. toctree::
   :maxdepth: 2
   :caption: Оcновы моделирования в BioUML

   basics of visual modeling.rst
   types of diagrams.rst  
   
.. toctree::
   :maxdepth: 2
   :caption: Этапы создания моделей

   sbgn model.rst
   modular sbgn model.rst

.. toctree:: 
   :maxdepth: 2
   :caption: Принципы работы с диаграммами
   
   first steps in working with a diagram.rst
   working with diagram elements.rst
   
.. toctree:: 
   :maxdepth: 2
   :caption: SBGN модели
   
   sbgn elements.rst
   new sbgn elements.rst
   process creation.rst
   
.. toctree:: 
   :maxdepth: 2
   :caption: Математическая модель
   
   mathematical model.rst
   
.. toctree:: 
   :maxdepth: 2
   :caption: Иерархические модели
   
   modular models.rst
   
.. toctree:: 
   :maxdepth: 2
   :caption: Численный анализ модели
   
   model calculations.rst

.. toctree:: 
   :maxdepth: 2
   :caption: Physicell
   
   PhysiCell/PhysiCell_start/PhysiCell_start_MAIN.rst
   PhysiCell/PhysiCell_development/PhysiCell_development_MAIN.rst
   PhysiCell/PhysiCell_cell_properties/PhysiCell_cell_properties_MAIN.rst
   PhysiCell/PhysiCell_microenvironment/PhysiCell_microenvironment_MAIN.rst
   PhysiCell/PhysiCell_simulation/PhysiCell_simulation_MAIN.rst
   PhysiCell/PhysiCell_simulation_result/PhysiCell_simulation_result_MAIN.rst
   PhysiCell/PhysiCell_java/PhysiCell_java_MAIN.rst
   PhysiCell/PhysiCell_JavaScript/PhysiCell_JavaScript_MAIN.rst