Save density
If the option 
Save density is enabled, then after the simulation is completed, in the results directory you will have a folder called Density.
This folder contains tables called Density_[model time]. The model time value indicated in the name indicates how many time units after the start of the simulation this table was generated.
The number of tables will depend on the values of the Max Time and Report interval parameters (see example below).
Report interval = 10 (tables are saved every 10 model time units).
Max Time = 50 (simulation lasts for 50 model time units).
Tables in the Density folder:
- Density_0000,
- Density_0010,
- Density_0020,
- Density_0030,
- Density_0040,
- Density_0050.
These tables present the following data for each space cell of the external environment:
ID: unique identifier for each space cell,
X: space cell coordinate along the X axis,
Y: space cell coordinate along the Y axis,
Z: space cell coordinate along the Z axis,
[Substrate 1]: amount of substrate 1 in this space cell,
[Substrate 2]: amount of substrate 2 in this space cell,
…
…
…
[Substrate n]: The amount of substrate n in this space cell.
Note
In the table, each substrate in the model will have its own column, which will indicate the amount of this particular substrate in a given space cell.
An example of such a table is presented below:
ID |
X |
Y |
Z |
Substrate |
Substrate_1 |
|---|---|---|---|---|---|
1 |
-490.0 |
-490.0 |
0.0 |
0.005 |
100.0 |
2 |
-470.0 |
-490.0 |
0.0 |
0.005 |
100.0 |
3 |
-450.0 |
-490.0 |
0.0 |
0.005 |
100.0 |
4 |
-430.0 |
-490.0 |
0.0 |
0.005 |
100.0 |
5 |
-410.0 |
-490.0 |
0.0 |
0.005 |
100.0 |
… |
… |
… |
… |
… |
… |
▼ table continues ▼